2025 June 17
Evolving the preprint evaluation world with Sciety
This post is based on an interview with Sciety team at eLife.
Geoffrey Bilder, Jonathan Rees, Henry Thompson – 2018 April 24
Crossref has decided to change the HTTP redirect code used by our DOIs from 303
back to the more commonly used 302
. Our implementation of 303 redirects back in 2010 was based on recommended best practice for supporting linked data identifiers. Unfortunately, very few other parties have adopted this practice.
One of the cool things about working in Crossref Labs is that interesting experiments come up from time to time. One experiment, entitled “what happens if you plot DOI referral domains on a chart?” turned into the Chronograph project. In case you missed it, Chronograph analyses our DOI resolution logs and shows how many times each DOI link was resolved per month, and also how many times a given domain referred traffic to DOI links per day.
I’m a co-founder with rOpenSci, a non-profit that focuses on making software to facilitate reproducible and open science. Back in 2013 we started to make an R client working with various Crossref web services. I was lucky enough to attend last year’s Crossref annual meeting in Boston, and gave one talk on details of the programmatic clients, and another higher level talk on text mining and use of metadata for research.
Crossref has a newish API encompassing works, journals, members, funders and more (check out the API docs), as well as a few other services. Essential to making the Crossref APIs easily accessible—and facilitating easy tool/app creation and exploration—are programmatic clients for popular languages. I’ve maintained an R client for a while now, and have been working on Python and Ruby clients for the past four months or so.
We regularly see developers using regular expressions to validate or scrape for DOIs. For modern Crossref DOIs the regular expression is short
/^10.\d{4,9}/[-._;()/:A-Z0-9]+$/i
For the 74.9M DOIs we have seen this matches 74.4M of them. If you need to use only one pattern then use this one.
So does anybody remember the posting DOIs and Linked Data: Some Concrete Proposals?
Well, we went with option “D.”
From now on, DOIs, expressed as HTTP URIs, can be used with content-negotiation.
Let’s get straight to the point. If you have curl installed, you can start playing with content-negotiation and Crossref DOIs right away:
curl -D - -L -H  “Accept: application/rdf+xml” “
http://dx.doi.org.pluma.sjfc.edu/10.1126/science.1157784
”Âcurl -D - -L -H  “Accept: text/turtle” “
http://dx.doi.org.pluma.sjfc.edu/10.1126/science.1157784
”
So the other day Noel O’Boyle made me feel guilty when he pinged me and asked about the possibility using one of the Crossref APIs for creating a Ubiquity extension. You see, I had played with the idea myself and had not gotten around to doing much about it. This seemed inexcusable- particularly given how easy it is to build such extensions using the API we developed for the WordPress and Moveable Type plugins that we announced earlier in the year. So I dug up my half-finished code, cleaned it up a bit and have posted the results.
Not specifically publishing-related, but here is a fun rant interview with Alan Kay titled The PC Must Be Revamped—Now.
My favorite bit…
“…in the last few years I’ve been asking computer scientists and programmers whether they’ve ever typed E-N-G-E-L-B-A-R-T into Google-and none of them have. I don’t think you could find a physicist who has not gone back and tried to find out what Newton actually did. It’s unimaginable. Yet the computing profession acts as if there isn’t anything to learn from the past, so most people haven’t gone back and referenced what Engelbart thought. ”
Rob Cornelius has a practical little demo of using Yahoo! pipes against some Ingenta feeds.
Like Tony, I keep experiencing speed/stability problems while accessing pipes so I haven’t yet become a crack-pipes-head.
Um, well. Seems according to O’Reilly Ruby that Ruby is now a mainstream language.
“The Ruby programming language just made the A-list on the TIOBE Programming Community Index, and Ruby is now listed as a mainstream programming language. For the past three or four years Ruby has consistently placed in the high 20’s in this index, but is now placed as the 13th most popular programming language!”
(No language wars, but I am, I will confess, a big admirer - for some time.)
Destacando nuestra comunidad en Colombia
2025 June 05